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grantDate 2022-05-03-04:00^^<http://www.w3.org/2001/XMLSchema#date>
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publicationDate 2022-05-03-04:00^^<http://www.w3.org/2001/XMLSchema#date>
publicationNumber US-11321826-B2
titleOfInvention High throughput method for accurate prediction of compound-induced liver injury
abstract A method and system for predicting liver injury in vivo due to hepatocyte damage by a test compound are provided. The method includes acquiring images of fluorescently stained cells obtained from a cell culture in which the cells have been treated with a dose-range of at least the test compound and its vehicle. The cells may be hepatic cells including primary or immortalized hepatocytes, hepatoma cells or induced pluripotent stem cell-derived hepatocyte-like cells. The acquired images are segmented. The method further includes extracting and analyzing one or more phenotypic features from the segmented images, wherein the one or more phenotypic features are selected from the group of intensity, textural, morphological, or ratiometric features consisting of (a) features of DNA, (b) features of RELA (NF-KB p65), and (c) features of actin filaments at different subcellular regions and d) features of cellular organelles and their substructures in the segmented images. Finally, the method includes normalizing results from the treated samples to vehicle controls and predicting the probability of liver injury by the test compound based on test compound-induced normalized changes of the extracted and selected phenotypic features using machine learning methods.
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http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID33127
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID818012
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID45282
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID33749
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID32093
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID832585
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID45706
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID821556
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID843031
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID33748
http://rdf.ncbi.nlm.nih.gov/pubchem/protein/ACCQ8H0I7
http://rdf.ncbi.nlm.nih.gov/pubchem/protein/ACCE2RQT2
http://rdf.ncbi.nlm.nih.gov/pubchem/substance/SID226406985
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID44858
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID822110
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID820697
http://rdf.ncbi.nlm.nih.gov/pubchem/protein/ACCA0A1S6M1N0
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID33755
http://rdf.ncbi.nlm.nih.gov/pubchem/protein/ACCV4HJ73
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID820696
http://rdf.ncbi.nlm.nih.gov/pubchem/protein/ACCQ9MBF5
http://rdf.ncbi.nlm.nih.gov/pubchem/protein/ACCA0A1S6M1L9
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID36317
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID829277
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID181926
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID832559
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID100334678
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID822506
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID33056
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID45524
http://rdf.ncbi.nlm.nih.gov/pubchem/protein/ACCC4B644
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID821554
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID828885
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID817435
http://rdf.ncbi.nlm.nih.gov/pubchem/gene/GID34036
http://rdf.ncbi.nlm.nih.gov/pubchem/substance/SID226409751

Total number of triples: 341.