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filingDate 2019-09-04-04:00^^<http://www.w3.org/2001/XMLSchema#date>
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publicationDate 2021-07-14-04:00^^<http://www.w3.org/2001/XMLSchema#date>
publicationNumber EP-3847276-A2
titleOfInvention Methods and systems for detecting allelic imbalance in cell-free nucleic acid samples
abstract The present disclosure provides methods and systems for detecting an allelic imbalance in a sample from a subject, comprising: (a) sequencing cell-free DNA molecules from the sample to generate sequence reads; (b) aligning at least a portion of the sequence reads to a reference sequence to produce aligned sequence reads; (c) for at least a portion of the plurality of aligned sequence reads, identifying a germline variant present at a mutant allele fraction (MAF) in the sample, thereby identifying a set of germline variants in the sample, wherein individual germline variants in the set of germline variants have corresponding MAF values; (d) determining a quantitative measure of the set of germline variants that are among a plurality of discrete ranges of MAF values; and (e) detecting the allelic imbalance based on a predetermined criterion by filtering the set of germline variants based on at least the quantitative measure.
priorityDate 2018-09-04-04:00^^<http://www.w3.org/2001/XMLSchema#date>
type http://data.epo.org/linked-data/def/patent/Publication

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